PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015766
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family M-type_MADS
Protein Properties Length: 104aa    MW: 11909.9 Da    PI: 10.8502
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015766genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.71.3e-27959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krie+ks rqv+fskRr+g++KKA E+S+LCda+ a+++fss+gkly++ss
  Lus10015766  9 KRIEDKSSRQVSFSKRRKGLMKKAREISILCDAQLALLVFSSHGKLYDFSS 59
                 79***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.801161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-27272IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-26323IPR002100Transcription factor, MADS-box
PfamPF003194.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MGRRKMELKR IEDKSSRQVS FSKRRKGLMK KAREISILCD AQLALLVFSS HGKLYDFSSH  60
HSSNSSYCDR TVRTVLRALL IETSLRHCAN INLLSHTWVL IAY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A8e-18259158Myocyte-specific enhancer factor 2A
3mu6_B8e-18259158Myocyte-specific enhancer factor 2A
3mu6_C8e-18259158Myocyte-specific enhancer factor 2A
3mu6_D8e-18259158Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795053.13e-27PREDICTED: agamous-like MADS-box protein AGL27 isoform X2
RefseqXP_016435773.13e-27PREDICTED: agamous-like MADS-box protein AGL27 isoform X2
SwissprotQ9ATE55e-25FBP24_PETHY; MADS-box protein FBP24
SwissprotQ9S7Q73e-25FLC_ARATH; MADS-box protein FLOWERING LOCUS C
TrEMBLF1SY131e-26F1SY13_EUSER; Flowering locus C-like protein, splicing variant 1
TrEMBLF1T1191e-26F1T119_9ERIC; MADS-box transcription factor
STRINGPOPTR_0003s16870.17e-25(Populus trichocarpa)
STRINGPOPTR_0003s16840.17e-25(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.12e-25MIKC_MADS family protein